1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctaaataagtaaacaaggcttgtataattttcacatgctttcttaatagatttcttatatccaaattactcaattagtagtttcatatgatttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
species | Glycine max |
transcript | GLYMA16G29020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTT- GCAGATCCGGGTCAATTTTTTCAGAGGACCCACEST: gi|23055648|gb|BU577682.1|BU577682
genomic: ACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTGgtaagttttt ... atttttgcagGCTG-TCCGGGTCAATTTTTTCAGAGGATTCAC
EST: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTG GCTGTCCGGGTCAATTTTTTCAGAGGATTCACEST: gi|209729441|gb|BW651821.1|BW651821
genomic: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTGgtaagttttt ... atttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
EST: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTG GCTGTCCGGGTCAATTTTTTCAGAGGATTCACEST: gi|13562773|gb|BG550993.1|BG550993
genomic: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTGgtaagttttt ... atttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
EST: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTG GCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
genomic: ATGGATCACGGATTTCCTATTTCATTGGCCTCTTCCTATATTTCTCTTTGgtaagttttt ... atttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
aatagatttcttatatccaaattactcaattagtagtttcatatgatttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
tcttaat putative branch site (score: 3)
tttttgc putative PPT
tttcatatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaataagtaaacaaggcttgtataattttcacatgctttcttaatagatttcttatatccaaattactcaattagtagtttcatatgatttttgcagGCTGTCCGGGTCAATTTTTTCAGAGGATTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - taaacaag
- - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccaaa