1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cctaattcctgtacctttgctgttgccattatgcttccatagctactgatgaaatacatgataagttgcttacaattctctgtgtctcaaataatatcagGATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACGTCACGAGGCATTTGTTCTCCTGACATTTCTGTGACTCTTCCAAATACTT
species | Glycine max |
transcript | GLYMA16G28820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAAT GATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACGEST: gi|207832171|gb|GD803051.1|GD803051
genomic: GTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAATgtaaatatac ... ataatatcagGATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACG
EST: GTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAAT GATAGCAGAGACTTAACATCAAATAATCCAAG
genomic: GTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAATgtaaatatac ... ataatatcagGATAGCAGAGACTTAACATCAAATAATCCAAG
ctgatgaaatacatgataagttgcttacaattctctgtgtctcaaataatatcagGATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACGTCACGAGGCATTTGTTCTCCTGACATTTCTGTGACTCTTCCAAATACTT
tgcttac putative branch site (score: 2)
tcaaataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaattcctgtacctttgctgttgccattatgcttccatagctactgatgaaatacatgataagttgcttacaattctctgtgtctcaaataatatcagGATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACGTCACGAGGCATTTGTTCTCCTGACATTTCTGTGACTCTTCCAAATACTT
- - - tcctgta
- - - - - - -cctttgc
- - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - -tgcttcc
- - - - - - - - - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac