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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaatgtttgtaacagatgcctgcttctcctcttttgcttatttagttgtcaaaagttgcagtgtccactttatgctgaaatgcttgttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACCGCTATGAGTGCCTTGCAAG

Basic information

species Glycine max
transcript GLYMA16G28620.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28620.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0166g00240.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttaatgtttgtaacagatgcctgcttctcctcttttgcttatttagtt-gtcaaaagttgcagtgtccactttatgctgaaatgcttgtt-cattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACCGCTATGAGTGCCTTGCAAG
|||||||      |||||| | |  |     | ||||     ||  | || | | ||||    | |     ||    | || ||    | | |  |   |||||||||||| ||||||||| |  ||||||||| ||||| ||| |||  ||||| ||||| ||||| ||  ||||||| |||||||
gtaagtt----acttgtaataaacactccactgtcct---aggcccacttggctagtcagttttcgttacatcactgtgattctcttcttcatactgttttgcagCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534273|gb|EH262406.1|EH262406
EST:     CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACAT                         CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCGAAACATgtaagtttaa ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttgtcaaaagttgcagtgtccactttatgctgaaatgcttgttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACCGCTATGAGTGCCTTGCAAG
                                         cttgttc  CT-rich tract
         aaaagtt  TA-rich tract