1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atagggaataaaactaattttgattgcaaattgatggacctaagatacattttgatgagctgaggcttttggtgatgatggtggtggtgttttttaacagTGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCTAAGCGCGGAAA
species | Glycine max |
transcript | GLYMA16G28310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACA TGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCTEST: gi|14125499|gb|BG789937.1|BG789937
genomic: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACAgtgagtgatt ... tttttaacagTGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCT
EST: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACA TGCATCTTGGTTTCTGAAGAEST: gi|6070043|gb|AW099600.1|AW099600
genomic: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACAgtgagtgatt ... tttttaacagTGCATCTTGGTTTCTGAAGA
EST: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACA TGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCT
genomic: TTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACAgtgagtgatt ... tttttaacagTGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCT
tacattttgatgagctgaggcttttggtgatgatggtggtggtgttttttaacagTGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCTAAGCGCGGAAA
ttttgat putative branch site (score: 4)
tgtttttt putative PPT
tgttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagggaataaaactaattttgattgcaaattgatggacctaagatacattttgatgagctgaggcttttggtgatgatggtggtggtgttttttaacagTGCATCTTGGTTTCTGAAGAAGATGAAGAAGCGATAATTGTGGAGCCTTCTAAGCGCGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - aataaaa
- - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt