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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcattgttgtttttgatttttatttactctatttgctgttttaaccttaaaattagctctgttatgcaacatttatttatttcctgcgtttatctagtaccctttttcttattattattattattttttatcatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGCACACTAAGCCCAATAGATTTGTACC

Basic information

species Glycine max
transcript GLYMA16G28290.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 4
gttagcattgttgtttttgatttttatttactctatttgctgttttaaccttaaaattagctctgttatgcaacatttatttatttcctgcgtttatctagtaccctttttcttattattattattattttttatcatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGCACACTAAGCCCAATAGATTTGTACC
                          | | | |  | |  |  | ||   || ||     || | || | |   |||||      |   | || ||| || | |  ||| ||||  | ||               | ||||||||| | || ||||||||||||||||| || ||||| || ||||| |||||||| || ||||||||||||||||| || |||||||| || ||| | || |
--------------------------tctgcacagtgttgtcctctatgtttgaat----ctttattctactctatttaacctagttacgtgtatatttattgcggtttctcttcatgttgg-------------cttttcagCTTAGCTGTCATGATGCTTCTCTTGCCATAAAGCCTGTATTTGAACGATTTCAATCAGTTGTGATTACATCTGGAACTCTAAGCCCCATTGATCTCTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgtttatctagtaccctttttcttattattattattattttttatcatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGCACACTAAGCCCAATAGATTTGTACC
                                       ttttttatcatttc  CT-rich tract
             taccctttttcttatt  TA-rich tract