1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acaaaattatgtttctggttttttatggaagactatctttatatttgattggtgtggatgtgttctattacttgtttcatcccgtttaaaaactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAG
species | Glycine max |
transcript | GLYMA16G27970.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAAGTCAGCTG GCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAEST: gi|192326435|gb|FK017707.1|FK017707
genomic: TTCAGAAGTCAGCTGgtcagattct ... aactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCA
EST: ATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTG GCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAEST: gi|9900186|gb|BE609154.1|BE609154
genomic: ATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGgtcagattct ... aactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCA
EST: TTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTG GCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCA
genomic: TTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGgtcagattct ... aactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCA
tgattggtgtggatgtgttctattacttgtttcatcccgtttaaaaactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAG
atttgat putative branch site (score: 5)
tttaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaattatgtttctggttttttatggaagactatctttatatttgattggtgtggatgtgttctattacttgtttcatcccgtttaaaaactgtgtagGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc