1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtagataaaaatgataaatcatgagaactcttatgttggttgatcttttcttaacactttcattctgtgactgactcatctttgtcttggttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAATTTATCTGCATTGGCAGATTCACTGCGGTTTCTTTTCAAGTATTGGGAC
species | Glycine max |
transcript | GLYMA16G27820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTG ATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCTCCAACCTAAGCCAAEST: gi|10232238|gb|BE801126.1|BE801126
genomic: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctg ... gttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
EST: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTG ATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAAEST: gi|13181556|gb|BG352896.1|BG352896
genomic: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctg ... gttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
EST: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTG ATTNTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAAEST: gi|31458881|gb|CD400909.1|CD400909
genomic: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctg ... gttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
EST: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTG ATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCGAEST: gi|9258611|gb|BE346758.1|BE346758
genomic: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctg ... gttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
EST: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTG ATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
genomic: GGTTGACAAACAAAAGAGTTGACAGATATGACTACAACACTGCCTCGTTGgtaagttctg ... gttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAA
cttttcttaacactttcattctgtgactgactcatctttgtcttggttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAATTTATCTGCATTGGCAGATTCACTGCGGTTTCTTTTCAAGTATTGGGAC
gactgac putative branch site (score: 2)
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagataaaaatgataaatcatgagaactcttatgttggttgatcttttcttaacactttcattctgtgactgactcatctttgtcttggttttgacagATTTTCATATTCCTGTCATGCACTATTGCAGTTGGCACCAACCTAAGCCAATTTATCTGCATTGGCAGATTCACTGCGGTTTCTTTTCAAGTATTGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -ataaaaa
- - - - - - - - - -tcatgag
- - - - - - - - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cactttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgactg