1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taatggatttttaacattgtttaggtcattcttgtaaccaaagtataaaatgtcaaccattattctctaattatgtatctatgttctcaatattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCACCAAGGTGTGCAGATTTGCCTGAGTTGTTGCAGGTTCAGATGCTATTT
species | Glycine max |
transcript | GLYMA16G27420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAG GGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCEST: gi|254315421|gb|GR825230.1|GR825230
genomic: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAGgtaatctaga ... tattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGC
EST: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAG GGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCEST: gi|15338171|gb|BI498835.1|BI498835
genomic: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAGgtaatctaga ... tattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGC
EST: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAG GGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCEST: gi|9564471|gb|BE473980.1|BE473980
genomic: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAGgtaatctaga ... tattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGC
EST: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAG GGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTNTGCTGC
genomic: CTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTCAAAGgtaatctaga ... tattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGC
taaaatgtcaaccattattctctaattatgtatctatgttctcaatattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCACCAAGGTGTGCAGATTTGCCTGAGTTGTTGCAGGTTCAGATGCTATTT
ctctaat putative branch site (score: 3)
attattctctaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatggatttttaacattgtttaggtcattcttgtaaccaaagtataaaatgtcaaccattattctctaattatgtatctatgttctcaatattgttcagGGAATGCCCCCTTGACTTGAAGGAAGCCATATCCAGTGTATGTTTTGCTGCACCAAGGTGTGCAGATTTGCCTGAGTTGTTGCAGGTTCAGATGCTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG