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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatttacattgtttgtttttctctgatagaaaaagggagttttacttgatggttatgtactctgtacagTGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAG

Basic information

species Glycine max
transcript GLYMA16G27060.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270763|gb|BM887019.1|BM887019
EST:     AGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAG                         TGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATT
genomic: AGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAGgtatgtattt ... ctctgtacagTGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATT
EST: gi|15338067|gb|BI498723.1|BI498723
EST:     AGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAG                         TGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATT
genomic: AGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAGgtatgtattt ... ctctgtacagTGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttctctgatagaaaaagggagttttacttgatggttatgtactctgtacagTGATAATTTGGTGGAAGAAGCTGTAGGTGGTGCACTGGCTGCAAAATCATTCAGAGAGAGTGATGAAAAAGGCTTCTATGAGTGTGAG
           atagaaaaa  TA-rich tract