1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacaagaatttcaaccaaaaataaaaagtgtgttcagaaaattttgctgataacatcccctaaaccaattcccatatctaacttttcatgttcaaacaagGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGAC
species | Glycine max |
transcript | GLYMA16G26940.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTGACTGGGAAACCTGTA GAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTC
genomic: ATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTGACTGGGAAACCTGTAgtaagtagat ... ttcaaacaagGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTC
gctgataacatcccctaaaccaattcccatatctaacttttcatgttcaaacaagGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGAC
atctaac putative branch site (score: 2)
atatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaagaatttcaaccaaaaataaaaagtgtgttcagaaaattttgctgataacatcccctaaaccaattcccatatctaacttttcatgttcaaacaagGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
aacaagaa
- - - - - -caaccaa
- - - - - - - - - aaataaa
- - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattcc