1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaagcaagtgatccaatccttgacatcttggaacaaagtctaatattggctaatctttatactatcttgtactgagttcatttgtttgtgttgttttagGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAAGGAACTGTCCTCATACATACAGCTGAGCAG
species | Glycine max |
transcript | GLYMA16G26920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAAAAGTGACGCTG-CGGGATTATAAAGCAAGCAGAAAAGGCGAAG GTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAEST: gi|207782529|gb|GD754982.1|GD754982
genomic: TTCTGAAAAGTGACGCTGTCGGGATTATAAAGCAAGCAGAAAAGGCGAAGgtgagctttc ... gttgttttagGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAA
EST: TTCTGAAAAGTGACGCTGTCGGGATTATAAAGCAAGCAG-AAAGGCGAAG GTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
genomic: TTCTGAAAAGTGACGCTGTCGGGATTATAAAGCAAGCAGAAAAGGCGAAGgtgagctttc ... gttgttttagGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
attggctaatctttatactatcttgtactgagttcatttgtttgtgttgttttagGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAAGGAACTGTCCTCATACATACAGCTGAGCAG
ggctaat putative branch site (score: 3)
ttgtttt putative PPT
taatctttatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagcaagtgatccaatccttgacatcttggaacaaagtctaatattggctaatctttatactatcttgtactgagttcatttgtttgtgttgttttagGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAGACTAAAGGAACTGTCCTCATACATACAGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - gcaagtg
- - - - - - -ccaatcc
- - - - - - - - - - -tgacatc
- - - - - - - - - - - - - - - ggaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt