1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgttttctctgaaattgtttttgaattaagaaaaattaattagatgcccttgcttacataaagtagttattatttactactagcaaaattaattaaaattttatgagatggttgttttatattctgaactctccaagagatcttacaagtaggtggttttttgggctttctcgaacagATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
species | Glycine max |
transcript | GLYMA16G26380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGCTGTGCATTATGTTTCACAAAGA-TGGCATGGAAGCTTCTTAAAG ATATCCCTAGATCTGCA-CTCGCEST: gi|58015676|gb|CX702418.1|CX702418
genomic: AATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGgtacgttttc ... tctcgaacagATATCCCTAGATCTGCAACTCGC
EST: AATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG ATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGEST: gi|58015425|gb|CX702167.1|CX702167
genomic: AATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGgtacgttttc ... tctcgaacagATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
EST: AATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG ATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
genomic: AATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGgtacgttttc ... tctcgaacagATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
ctgaactctccaagagatcttacaagtaggtggttttttgggctttctcgaacagATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
atcttac putative branch site (score: 3)
ctttctc putative PPT
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttttctctgaaattgtttttgaattaagaaaaattaattagatgcccttgcttacataaagtagttattatttactactagcaaaattaattaaaattttatgagatggttgttttatattctgaactctccaagagatcttacaagtaggtggttttttgggctttctcgaacagATATCCCTAGATCTGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG