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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcatcaaaacattttctatatttttggtagcaacggtcaaccttcctataggatataggtttaaatgactaattctgtttttgtcatccccattttcagGTCTGGAAGAGCTGTGCAGGCAGTGTTGCATTGCCTGAACAAAGCCATGCGCAGTCAACATCTAATGTCATCAAGACCAAAGGTGGTTGTGGTGTCAGAT

Basic information

species Glycine max
transcript GLYMA16G26160.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193398911|gb|FK365253.1|FK365253
EST:     GGTGGGGAGAATCCTGACATCTCATTGCATATGCGAATGCTTATGCATAG                         GTCTGGAAGAGCTGTGCAGGCAGTGTTGCATTGCCTGAACAAAGCCAATGC
genomic: GGTGGGGAGAATCCTGACATCTCATTGCATATGCGAATGCTTATGCATAGgtaatggaag ... ccattttcagGTCTGGAAGAGCTGTGCAGGCAGTGTTGCATTGCCTGAACAAAGCCA-TGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctataggatataggtttaaatgactaattctgtttttgtcatccccattttcagGTCTGGAAGAGCTGTGCAGGCAGTGTTGCATTGCCTGAACAAAGCCATGCGCAGTCAACATCTAATGTCATCAAGACCAAAGGTGGTTGTGGTGTCAGAT
                      gactaat  putative branch site (score: 2)
                                 tttttgtcatcccc  putative PPT
               tttaaatgactaatt  TA-rich tract