1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttctaggctatctgttaaatcttaagaggcattcaattttctatatccaccttgaacaaatattcttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCGTCAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
species | Glycine max |
transcript | GLYMA16G26110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|9439913|gb|BE440425.1|BE440425
genomic: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|193665013|gb|FK610931.1|FK610931
genomic: TACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|208260441|gb|GE058567.1|GE058567
genomic: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: CATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|15203857|gb|BI426625.1|BI426625
genomic: CATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|6501861|gb|AW203220.1|AW203220
genomic: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
genomic: TTCATCACTGCTATTGCTTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
tatccaccttgaacaaatattcttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCGTCAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
tcttaat putative branch site (score: 3)
aaatattcttttgatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctaggctatctgttaaatcttaagaggcattcaattttctatatccaccttgaacaaatattcttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCGTCAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -ctatctg
- - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgtg