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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatacatgccataacattttgattatcaagaaaatctagaataatatgcgtgaattattgtaaattttttaatattttttgagtctgttttcttattagGGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAGGAATAATTCCATGTGGACCTACATCGAGTATGTGCACAGATAGGTACAA

Basic information

species Glycine max
transcript GLYMA16G26020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336785|gb|CO980651.1|CO980651
EST:     AAATTATGATAAATACG                         GGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAG
genomic: AAATTATGATAAATACGgtaattaaac ... ttcttattagGGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAG
EST: gi|27424373|gb|CA935893.1|CA935893
EST:     AAATTATGATAAATACG                         GGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAG
genomic: AAATTATGATAAATACGgtaattaaac ... ttcttattagGGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcgtgaattattgtaaattttttaatattttttgagtctgttttcttattagGGTTCAAGACCGCAAGTAGAGCTTGCTGCGGAAATGGGGGACAATTTGCAGGAATAATTCCATGTGGACCTACATCGAGTATGTGCACAGATAGGTACAA
                      ttttaat  putative branch site (score: 3)
                                       tctgttttcttatt  putative PPT
        aattattgtaaatttt  TA-rich tract