1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttggaaattcaattcaagatattacttaaaaaagaatagaaaagtttaaaaggctccatgatctatcttaatttttctttttgttgttaaaaataaataaaaggttcttgttttggttggccagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGG
species | Glycine max |
transcript | GLYMA16G25990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAATCACAAAAGTTGAACTTCGAATGTTGCAG TTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATEST: gi|193420634|gb|FK390557.1|FK390557
genomic: GGGAAATCACAAAAGTTGAACTTCGAATGTTGCAGgttggaaatt ... ggttggccagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGAT
EST: GGGAAATCACTAAAAGTTGAACTTCGAATGTTGCAG TTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGG
genomic: GGGAAATCAC-AAAAGTTGAACTTCGAATGTTGCAGgttggaaatt ... ggttggccagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGG
aatttttctttttgttgttaaaaataaataaaaggttcttgttttggttggccagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGG
tcttaat putative branch site (score: 3)
ttctttttgttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaaattcaattcaagatattacttaaaaaagaatagaaaagtttaaaaggctccatgatctatcttaatttttctttttgttgttaaaaataaataaaaggttcttgttttggttggccagTTGGCAGGAGTTCAGTGTGCTGGTAACCCACATTTTTGGGTCAATGAGGATGGTTCATACCAAGAAGAAGGACAAAAAAATACAAAAGGGTGTATCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG