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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttccaatttcttagattccttctgattaatcaaatattcaaatgtgaaattcacacacttgttctttgggtcaaattaattaaatgtcaattttttcttcaaactaaagaacacatcatcataccatactttattatgttacagGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAATCTGGAATTCCAATACCAAATGGCACACCCAAGGCAGCACCTAGACAGG

Basic information

species Glycine max
transcript GLYMA16G25700.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287062|gb|BI470953.1|BI470953
EST:     ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG                         GATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAA
genomic: ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGGgtacatttcc ... tatgttacagGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAA
EST: gi|213589597|gb|DB965813.1|DB965813
EST:     ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG                         GATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAA
genomic: ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGGgtacatttcc ... tatgttacagGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAA
EST: gi|151411482|gb|EV281293.1|EV281293
EST:     ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG                         GATCATGAAGAGGAGAAAAAGCCATTGAC-CCACCGAAACCAACTAGCAAA
genomic: ACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGGgtacatttcc ... tatgttacagGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttcttcaaactaaagaacacatcatcataccatactttattatgttacagGATCATGAAGAGGAGAAAAAGCCATTGAAGCCACCGAAACCAACTAGCAAATCTGGAATTCCAATACCAAATGGCACACCCAAGGCAGCACCTAGACAGG
            aactaaa  putative branch site (score: 2)
                                       ctttatt  putative PPT
                                    atactttattatgtta  TA-rich tract