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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccactttctcactctttaatcccttgaatgcctctatgcctgagcagaaaaggatcaatttctcgtctgcttgtaggcaactatgtatgttcactgcctttacctagttgggcattttaactcacaatctttccttttttttttttttttcttaatcattatgctagACTCCAAGTGCTGTCCAGCAAAATACAGAGATTGAAGGGAAGGGAGCTGAAGGAAAATATCGGGACTCATCCAAAAAATTGAAAGGACCTTCTGCAAATA

Basic information

species Glycine max
transcript GLYMA16G25600.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924295|gb|AW830321.1|AW830321
EST:     CAGCTATATATCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGCAGTG                         ACTCCAAGTGCTGTCCAGCANAATACAGAGATTGAAGGGAAGGGAGCTGAA
genomic: CAGCTATATATCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGCAGTGgtaaaccact ... attatgctagACTCCAAGTGCTGTCCAGCAAAATACAGAGATTGAAGGGAAGGGAGCTGAA
EST: gi|9565806|gb|BE475315.1|BE475315
EST:     CAGCTATATATCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGCAGTG                         ACTCCAAGTGCTGTCCAGCAAAATACAGAGATTGAAGGGAAGGGAGCTGAA
genomic: CAGCTATATATCCTCCTGGGAGTATCTATGCTCATCCTAGCATGGCAGTGgtaaaccact ... attatgctagACTCCAAGTGCTGTCCAGCAAAATACAGAGATTGAAGGGAAGGGAGCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttaactcacaatctttccttttttttttttttttcttaatcattatgctagACTCCAAGTGCTGTCCAGCAAAATACAGAGATTGAAGGGAAGGGAGCTGAAGGAAAATATCGGGACTCATCCAAAAAATTGAAAGGACCTTCTGCAAATA
               tctttccttttttttt  CT-rich tract
             aatctttccttttttt  TA-rich tract