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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcacatatcgacatttttttcataaagtctatatatttactttaactataaaatatatcacacatattaccaatgttttgttgaggaagctcattgattatgccaatggttcatcttaaccagGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGG

Basic information

species Glycine max
transcript GLYMA16G25490.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25490.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttcacatatcgacatttttttcataaagtctatatatttactttaactataaaatatatcacacatattaccaatgttttgttgaggaagctcattgattatgccaatggttcatcttaaccagGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGG
                                             | |  |   | ||  |  ||   ||   |  | ||||||| ||  |   ||||||| |         ||  | |||  |||||  ||||||||||||| |||||||| ||   |||||  || || ||||| ||||||||||| |||||||| |||||
--------------------------------------------gtgataaactagtagcttgcattcatctacggttttttgttaag--actacattgatgacattttgcatttgt-ttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaatgttttgttgaggaagctcattgattatgccaatggttcatcttaaccagGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGG
                       cattgat  putative branch site (score: 4)
                                         ttcatctt  putative PPT
                        attgattat  TA-rich tract