1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttaatatccatcctcaaattattttctccagttagtgttgtgcagttcattctgaaaaatttacattattttttaaattttctattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
species | Glycine max |
transcript | GLYMA16G25450.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGEST: gi|208239540|gb|GE038626.1|GE038626
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGEST: gi|254320724|gb|GR827173.1|GR827173
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGEST: gi|14258923|gb|BG881840.1|BG881840
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
EST: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGgtatgttact ... cacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
gttcattctgaaaaatttacattattttttaaattttctattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
ttttctattttccacc CT-rich tract
ttctgaaaaatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatatccatcctcaaattattttctccagttagtgttgtgcagttcattctgaaaaatttacattattttttaaattttctattttccacctttcagTATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG
- - - -tccatcc
- - - - - - - - - - - - -tctccag
- - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - cattctg