1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattgagcatgaaccttgcaatttacaataccattgcaattcaagaattatattatatgccttcttgtctgtgattcacattaatatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
species | Glycine max |
transcript | GLYMA16G25450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGEST: gi|13789639|gb|BG652230.1|BG652230
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGEST: gi|120530268|gb|EH258402.1|EH258402
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGEST: gi|208239540|gb|GE038626.1|GE038626
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGEST: gi|254320724|gb|GR827173.1|GR827173
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGEST: gi|14258923|gb|BG881840.1|BG881840
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
genomic: GGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
aattatattatatgccttcttgtctgtgattcacattaatatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
cattaat putative branch site (score: 3)
attaatatgactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgagcatgaaccttgcaatttacaataccattgcaattcaagaattatattatatgccttcttgtctgtgattcacattaatatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA