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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgacaaatagtaaagagtatgttgttagtatttctcttttccaacatgtgctataaaaagtaaaatatgacgtttacctcaatcatgataaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTCAATGGTGTTGCTCTTCTAAATTCTGCCGGACAATTTGGCGATGGGAAA

Basic information

species Glycine max
transcript GLYMA16G25200.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208041567|gb|GD843017.1|GD843017
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGACTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|209725699|gb|BW663190.1|BW663190
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTG
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTG
EST: gi|298173858|gb|HO017194.1|HO017194
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCCTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|51337924|gb|CO981790.1|CO981790
EST:     GGAAATAGTAAAAGAACCAACCGTTTTAG-TGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|192301616|gb|FG998468.1|FG998468
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|151399533|gb|EV269404.1|EV269404
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|209728318|gb|BW658530.1|BW658530
EST:     AAGGAAATAGTAAAAGAACCAACCG-TTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: AAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|151405996|gb|EV275811.1|EV275811
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|120529684|gb|EH257818.1|EH257818
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|20814627|gb|BQ299105.1|BQ299105
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGGTGCAGCAACTGGGTTGCCTGATCCTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|151405769|gb|EV275583.1|EV275583
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: gi|209716247|gb|BW657550.1|BW657550
EST:     GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG                         CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgctataaaaagtaaaatatgacgtttacctcaatcatgataaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTCAATGGTGTTGCTCTTCTAAATTCTGCCGGACAATTTGGCGATGGGAAA
                                                ttttc  CT-rich tract
       tataaaaagtaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcgacaaatagtaaagagtatgttgttagtatttctcttttccaacatgtgctataaaaagtaaaatatgacgtttacctcaatcatgataaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTCAATGGTGTTGCTCTTCTAAATTCTGCCGGACAATTTGGCGATGGGAAA

- - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - -ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa