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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatccacagatccacttaaatctgcaagtgataaattgcataattgcctactgagtttataacaattacatggcagGATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTG

Basic information

species Glycine max
transcript GLYMA16G25190.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565633|gb|BE475142.1|BE475142
EST:     AATTTAGTGTTTCTTTCAGATATGGTGGGAGACAGGGCTCTTCATCCTCA                         GATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGA
genomic: AATTTAGTGTTTCTTTCAGATATGGTGGGAGACAGGGCTCTTCATCCTCAgtaagtatcc ... tacatggcagGATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaagtgataaattgcataattgcctactgagtttataacaattacatggcagGATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTG
                                   ttataac  putative branch site (score: 2)
                                  tttataacaattacat  TA-rich tract