1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtgtattgagttcatttcattgatattgtattgtaataagttcactttatggttattcatgtgttttttttttttaacgtgttgtagtaataatcacttcttgttcattgatttacttctttttttatttcttttttacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTG
species | Glycine max |
transcript | GLYMA16G25110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACAEST: gi|6070559|gb|AW099946.1|AW099946
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
EST: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACAEST: gi|13481256|gb|BG510599.1|BG510599
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
EST: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
aatcacttcttgttcattgatttacttctttttttatttcttttttacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTG
cattgat putative branch site (score: 4)
ttcattgatttacttc CT-rich tract
ttcattgatttacttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgtattgagttcatttcattgatattgtattgtaataagttcactttatggttattcatgtgttttttttttttaacgtgttgtagtaataatcacttcttgttcattgatttacttctttttttatttcttttttacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAATTTGGAAAATTTGTCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG