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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaaaacatggtcactatatcttgtttatcgtggttatcttcatcatatgaattgctaaccaatcatgaaaaaatttatctgtaaaaattaaatatcagATGCATTTAGAACCATAATGAGGGAGGAAGGATTTAGTGCACTTTACAAAGGGATTGTTCCTGGTCTATTTCTG

Basic information

species Glycine max
transcript GLYMA16G24580.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24580.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 5
--cttaaaacatggtcactatatcttgtttatcgtggttatcttcatcatatgaattgctaaccaatcatgaaaaaatttatctgtaaaaattaaatatcagATGCATTTAGAACCATAATGAGGGAGGAAGGATTTAGTGCACTTTACAAAGGGATTGTTCCTGGTCTATTTCTG
   |      |       | | |||| ||| |  |  ||    || | | ||   || | |     | |   |  |||   |   |    ||   ||||||||||| || ||||||||| | |  ||||||||||  ||||||||||| | |||||||| |||| |||| ||||| 
ttttggttggacaaattttgtttctttttttttttttttggtctccttaaattgctttcga--ttgttactcatcaatcacttcttgttcatgtgatatcagATGCTTTAAGAACCATACTTAAAGAGGAAGGATGGAGTGCACTTTATAGAGGGATTGCTCCTAGTCTTTTTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgaattgctaaccaatcatgaaaaaatttatctgtaaaaattaaatatcagATGCATTTAGAACCATAATGAGGGAGGAAGGATTTAGTGCACTTTACAAAGGGATTGTTCCTGGTCTATTTCTG
         tgctaac  putative branch site (score: 1)
                 aatcatgaaaaaattt  TA-rich tract