1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatccttgtaattttatttacctcaatttgttatgttgatattgatgaggttggttttgtttgtgtgatgctgtgatatgttaaaaaacttgtaattcagGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAG
species | Glycine max |
transcript | GLYMA16G24320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAG GGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATEST: gi|18848812|gb|BM567924.1|BM567924
genomic: TGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAGgtattcctta ... tgtaattcagGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGAT
EST: TGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAG GGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGAT
genomic: TGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAGgtattcctta ... tgtaattcagGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGAT
tgaggttggttttgtttgtgtgatgctgtgatatgttaaaaaacttgtaattcagGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAG
atatgttaaaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatccttgtaattttatttacctcaatttgttatgttgatattgatgaggttggttttgtttgtgtgatgctgtgatatgttaaaaaacttgtaattcagGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -ccttgta
- - - - - - - - - -acctcaa
- - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - gaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa