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...tatggtataagtcaatttttttaaacaattcattgttgtatatggtgtttgttagattgctactcattttatttgatttcttgctgtcattttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTCGTTTTTGGTGGCTCATATGCTGGAGCACTCAGTGCATGGTTCCGTCTCA
species | Glycine max |
transcript | GLYMA16G24270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTCCGTCAGTATTATCAG GATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCEST: gi|13252300|gb|BG363203.1|BG363203
genomic: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAGgcaagtttga ... tttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCC
EST: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAG GATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTEST: gi|192307849|gb|FG999328.1|FG999328
genomic: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAGgcaagtttga ... tttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCT
EST: CATCTAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAG GATTCCTTAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCEST: gi|192303244|gb|FG995580.1|FG995580
genomic: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAGgcaagtttga ... tttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTC
EST: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAG GATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTC
genomic: CATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGTCAGTATTATCAGgcaagtttga ... tttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTC
tgtttgttagattgctactcattttatttgatttcttgctgtcattttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTCGTTTTTGGTGGCTCATATGCTGGAGCACTCAGTGCATGGTTCCGTCTCA
atttgat putative branch site (score: 5)
tcattttc putative PPT
attttatttgatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggtataagtcaatttttttaaacaattcattgttgtatatggtgtttgttagattgctactcattttatttgatttcttgctgtcattttcatgtagGATTCCTTAAATGCAAAGCTTAATAGAACAAAAACTGAAAACCCCTGGTTCGTTTTTGGTGGCTCATATGCTGGAGCACTCAGTGCATGGTTCCGTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact