1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggacttcgtgttttggttaatttctgatccactgatgtggttttaaaattcacttttgataattttagaatcctctttcaatctttcacttattttacagACAAATGATCAGCATCAAATATATACAAGTTTAGAGCAAGTGGTAGGGACAGGTGCAGATCCAAAACCTGGACTCTTCCCCTCTTATCCCAGCATGAACT
species | Glycine max |
transcript | GLYMA16G23920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGAGTTGGTTTATGATTGGGACA-CA-GAGATTGA-TATAG-AACT ACAA-TGATCAGCATCAA-TATATACA-GTTTAGAGCAEST: gi|14999956|gb|BI320770.1|BI320770
genomic: CAGAAGAGTTGGTTTATGATTGGGACAACAAGAGATTGAATATAGGAACTgtaaggactt ... tattttacagACAAATGATCAGCATCAAATATATACAAGTTTAGAGCA
EST: CAGAAGAGTTGGTTTATGATTGGGACAACAAGAGATTGAATATAGGAACT ACAAATGATCAACATCAAATATATACAAGTTTAGAGCAAGTGGTAGGGACA
genomic: CAGAAGAGTTGGTTTATGATTGGGACAACAAGAGATTGAATATAGGAACTgtaaggactt ... tattttacagACAAATGATCAGCATCAAATATATACAAGTTTAGAGCAAGTGGTAGGGACA
aaattcacttttgataattttagaatcctctttcaatctttcacttattttacagACAAATGATCAGCATCAAATATATACAAGTTTAGAGCAAGTGGTAGGGACAGGTGCAGATCCAAAACCTGGACTCTTCCCCTCTTATCCCAGCATGAACT
ttttgat putative branch site (score: 4)
tcctctttcaatcttt putative PPT
ttttgataattttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggacttcgtgttttggttaatttctgatccactgatgtggttttaaaattcacttttgataattttagaatcctctttcaatctttcacttattttacagACAAATGATCAGCATCAAATATATACAAGTTTAGAGCAAGTGGTAGGGACAGGTGCAGATCCAAAACCTGGACTCTTCCCCTCTTATCCCAGCATGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT