Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattgattttttggacttgtgtagtcctttgaatttttcgtttgaaacctagttcccacttaatggttatgattcgcatgtctttcttgtgtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCATACTTAAATACCTACGACGGTCGCACTATCCGCTACCCAGACCCTCTCA

Basic information

species Glycine max
transcript GLYMA16G23730.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725149|gb|BW663076.1|BW663076
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|16348394|gb|BI973989.1|BI973989
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|18039002|gb|BM307296.1|BM307296
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298180253|gb|HO025468.1|HO025468
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|10845998|gb|BF071235.1|BF071235
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298176453|gb|HO026688.1|HO026688
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|6666961|gb|AW278420.1|AW278420
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|14991140|gb|BI316813.1|BI316813
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|4313657|gb|AI460776.1|AI460776
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCANAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|6455278|gb|AW185961.1|AW185961
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298190839|gb|HO032960.1|HO032960
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|192331864|gb|FK026648.1|FK026648
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|209706132|gb|BW653424.1|BW653424
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298194785|gb|HO043257.1|HO043257
EST:     ATACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|213606544|gb|DB972493.1|DB972493
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|21677168|gb|BQ629519.1|BQ629519
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|6746978|gb|AW317434.1|AW317434
EST:     -TTCTAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|7684838|gb|AW755486.1|AW755486
EST:     ACACCAAATGTCGATTCCGTCTCCACTCAGTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTGTGTGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298178682|gb|HO024417.1|HO024417
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCA
EST: gi|192297728|gb|FG989963.1|FG989963
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGGAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|16346110|gb|BI971705.1|BI971705
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGCTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|7145675|gb|AW507597.1|AW507597
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298163757|gb|HO012490.1|HO012490
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTTGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|193540030|gb|FK499014.1|FK499014
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|5687916|gb|AI940931.1|AI940931
EST:     CACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAACG                         T-CAAGCTTTGCACAGATCGCTCAGCGCAGTTCGCGCAAAAGGGTATCCC
genomic: CACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAA-Ggtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCC
EST: gi|46492670|gb|CN472226.1|CN472226
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAG
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAG
EST: gi|12772845|gb|BG237772.1|BG237772
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|193541339|gb|FK498783.1|FK498783
EST:     GTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: GTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|16347050|gb|BI972645.1|BI972645
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGGATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|6134564|gb|AW132957.1|AW132957
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298176076|gb|HO015481.1|HO015481
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298194198|gb|HO040846.1|HO040846
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|11275151|gb|BF325474.1|BF325474
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTNTGCAAAGTTCGCTCANTGCAGTTTTGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298180780|gb|HO022219.1|HO022219
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|209706237|gb|BW656742.1|BW656742
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298197686|gb|HO045165.1|HO045165
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|21678409|gb|BQ630760.1|BQ630760
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298192769|gb|HO033203.1|HO033203
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298186856|gb|HO033955.1|HO033955
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|8670337|gb|BE191444.1|BE191444
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|151397451|gb|EV267324.1|EV267324
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298188698|gb|HO035391.1|HO035391
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|22929931|gb|BU547070.1|BU547070
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|15814022|gb|BI786297.1|BI786297
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|19453490|gb|BM954900.1|BM954900
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|23727040|gb|BU761534.1|BU761534
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|193494021|gb|FK461877.1|FK461877
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|6914313|gb|AW395843.1|AW395843
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|24206283|gb|BU965536.1|BU965536
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|7145645|gb|AW507567.1|AW507567
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|8827949|gb|BE211679.1|BE211679
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298178660|gb|HO024395.1|HO024395
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|13787383|gb|BG649975.1|BG649975
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|13481889|gb|BG511232.1|BG511232
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGTAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|16347648|gb|BI973243.1|BI973243
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|10846181|gb|BF069142.1|BF069142
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTNTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298169099|gb|HO020459.1|HO020459
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298180270|gb|HO025485.1|HO025485
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGCTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298176172|gb|HO015577.1|HO015577
EST:     ATACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|26059000|gb|CA801914.1|CA801914
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCATTCAGGGATGATGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|209729579|gb|BW655155.1|BW655155
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|21888969|gb|BQ742182.1|BQ742182
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|23733640|gb|BU765027.1|BU765027
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298195263|gb|HO043791.1|HO043791
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|298197240|gb|HO041983.1|HO041983
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|19453552|gb|BM954962.1|BM954962
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
EST: gi|7234791|gb|AW570124.1|AW570124
EST:     ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA
genomic: ACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttgg ... gtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctagttcccacttaatggttatgattcgcatgtctttcttgtgtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCATACTTAAATACCTACGACGGTCGCACTATCCGCTACCCAGACCCTCTCA
            acttaat  putative branch site (score: 4)
                     ttatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattgattttttggacttgtgtagtcctttgaatttttcgtttgaaacctagttcccacttaatggttatgattcgcatgtctttcttgtgtgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAGGGTATCCCATACTTAAATACCTACGACGGTCGCACTATCCGCTACCCAGACCCTCTCA

- - - - - - - acttgtg
- - - - - - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - - - - tgaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttatg