1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgaatatagctatgctatgagttcttgctttattgaaaaactaatttctgataacaattagttgatttttcctttttactgaccatgtaattatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGAAAAATCTTACATTATATCAGAGGCAGGTGTTCTTGCAGACAAGATAAG
species | Glycine max |
transcript | GLYMA16G19450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGEST: gi|192297436|gb|FG989500.1|FG989500
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGEST: gi|6482288|gb|AW201559.1|AW201559
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGGCTTTGATTCAAAGAGACTACAGAGCATTGTGAAGGEST: gi|57574212|gb|CX547187.1|CX547187
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGEST: gi|5770512|gb|AI973686.1|AI973686
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGEST: gi|22931000|gb|BU548139.1|BU548139
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG ATCAAACGCAGCTTGACTTCGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
ttctgataacaattagttgatttttcctttttactgaccatgtaattatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGAAAAATCTTACATTATATCAGAGGCAGGTGTTCTTGCAGACAAGATAAG
tactgac putative branch site (score: 1)
aattagttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatatagctatgctatgagttcttgctttattgaaaaactaatttctgataacaattagttgatttttcctttttactgaccatgtaattatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGGAAAAATCTTACATTATATCAGAGGCAGGTGTTCTTGCAGACAAGATAAG
- - - - -ctatgct
- - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgta