Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtatgctgaaaaaactaatatttaaatcagctattgacaatgtgattatcatcatttaacttttccttcttcttttgtttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTTCTTTAGCCAAAGATGTTCCTGGTGACAAGGCTGGGTTTTTGTAAATTTC

Basic information

species Glycine max
transcript GLYMA16G19270.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234392|gb|AW569730.1|AW569730
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|254339193|gb|GR847910.1|GR847910
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|11413592|gb|BF425603.1|BF425603
EST:     AGAGGCACGAGCTAGCTGAGCAGATCAAGGACATCTCAGAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|192303525|gb|FG995931.1|FG995931
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|38191192|gb|CF920398.1|CF920398
EST:     AGAGGCAGGAGCCAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|33388247|gb|CA851454.1|CA851454
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|254339194|gb|GR847911.1|GR847911
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|254320942|gb|GR827391.1|GR827391
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|7589011|gb|AW704794.1|AW704794
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|254342034|gb|GR853171.1|GR853171
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|254349082|gb|GR860354.1|GR860354
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|14260041|gb|BG882949.1|BG882949
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|27424668|gb|CA936188.1|CA936188
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|15000946|gb|BI321760.1|BI321760
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TGGGTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|41146487|gb|CK606698.1|CK606698
EST:     GGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: GGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|192303524|gb|FG995930.1|FG995930
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|19053736|gb|BM732403.1|BM732403
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
EST: gi|6726817|gb|AW311236.1|AW311236
EST:     AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG                         TCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT
genomic: AGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAGgttgtatgct ... tttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacaatgtgattatcatcatttaacttttccttcttcttttgtttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTTCTTTAGCCAAAGATGTTCCTGGTGACAAGGCTGGGTTTTTGTAAATTTC
                tcatcatttaactttt  CT-rich tract
            attatcatcatttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgtatgctgaaaaaactaatatttaaatcagctattgacaatgtgattatcatcatttaacttttccttcttcttttgtttcttccagTCATTCAAGAACCAGTAATTTTGGTATTCTTGCTAATGGAGTCCTGATTTTCTTTAGCCAAAGATGTTCCTGGTGACAAGGCTGGGTTTTTGTAAATTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG