1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtcatgcatcctactgacttttttccgccattagaaaaagttcattctcttaactgggttttgttttgattatcaaggtctaatatttctatgtaaaaactttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATG
species | Glycine max |
transcript | GLYMA16G18440.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTNTTCAGGCTGAAGAA GTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGEST: gi|192327498|gb|FK019625.1|FK019625
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
EST: TGCGGTCCTTGCGTCTCGAAAAGTATCTCATAACTTTTCAG-CTGAAGAA GTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGEST: gi|192296023|gb|FG989417.1|FG989417
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
EST: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAG-CTGAAGAA GTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGEST: gi|12496615|gb|BG047153.1|BG047153
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
EST: TGCGGTCCTTGTGTCTCGAACAGTATCTCATAACTTTTCATGCTGAGGAA GT-GATGTGACAGCTCTCA-TCATATGACTGATGAAGATCTCAAG-CTATGEST: gi|192326148|gb|FK016265.1|FK016265
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
EST: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTC-GGCTGAAGAA GTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAEST: gi|192322959|gb|FK016690.1|FK016690
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCA
EST: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTC-GGCTGAAGAA GTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
genomic: TGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAgtatgtcatg ... tttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATG
gggttttgttttgattatcaaggtctaatatttctatgtaaaaactttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATG
gtctaat putative branch site (score: 3)
ctttttttc putative PPT
tctaatatttctatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcatgcatcctactgacttttttccgccattagaaaaagttcattctcttaactgggttttgttttgattatcaaggtctaatatttctatgtaaaaactttttttcagGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA