1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtgttatgtattttggccactgccttcccgctcattcatttgtttaattattcttattcttattcagttgctaacgtcttgtattcttctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAAGCTTAGAGGCAGACCATTGGAATTGACTCTGCCCTGTCCATCATCATC
species | Glycine max |
transcript | GLYMA16G18380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTTTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|209706363|gb|BW676325.1|BW676325
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|33389643|gb|CA852850.1|CA852850
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|22522289|gb|BU081109.1|BU081109
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
ttaattattcttattcttattcagttgctaacgtcttgtattcttctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAAGCTTAGAGGCAGACCATTGGAATTGACTCTGCCCTGTCCATCATCATC
tgctaac putative branch site (score: 1)
tcttgtattcttct CT-rich tract
tattcttattcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgttatgtattttggccactgccttcccgctcattcatttgtttaattattcttattcttattcagttgctaacgtcttgtattcttctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAAGCTTAGAGGCAGACCATTGGAATTGACTCTGCCCTGTCCATCATCATC
- -tgttatg
- - - - - - - - - -cactgcc
- - - - - - - - - - - - - - cccgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc