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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtggtttgtttcgttgagtgtcatcatttactcttgtagattttgataatgttttttttttcttatgggtatcatcatttatatgattttagGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTG

Basic information

species Glycine max
transcript GLYMA16G18030.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacgtggtttgtttcgttgagtgtcatcatttactcttgtagattttgataatgttttttttttcttatgggtatcatcatttatatgattttagGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTG
|||     ||  |||  |||| | |     | |   ||   || |||  | ||| |||  |   |    |   |||   ||| |  |||    ||||||||||| |||||  | | |||||||||||||||   ||||  |||||||||  | |||||||||||||| || |||||||| ||  | |||
gtaaactcttcatttttttgaatct----gtatgtcctc--aggtttaaacaatttttcatgcatgacttcattattcccatgtgcatg---ctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG

upper sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 4
gtacgtggtttgtttcgttgagtgtcatcatttactcttgtagattttgataatgttttttttttcttatggg-tatcatcatttatatgattttagGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTG
|||| |  | |  ||  ||   |  | |    ||   ||    ||          ||  || ||| | |     | ||| ||||||  || | |||||||||||| || ||||| || ||||||||||| || || ||  ||| ||||||  | ||||| |||||||| || ||||||||||||||||||
gtac-tattctacttgattcttttactttgaatatcatttggaatgccctctgccttccttgtttataacattctttcaacatttac-tgttattagGCTGAATGGGGACCCCTTCGGCATGTTCGTGTGATTAAAGAACGAAGTTCTGGCATATCTCGAGGATTTGCTTTTATTGATTTTCCTTCTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttgataatgttttttttttcttatgggtatcatcatttatatgattttagGCTGAATGTGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGTGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTG
   ttttgat  putative branch site (score: 4)
     ttgataatgttttttt  TA-rich tract