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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtctggattttgtggcatattggtggcctatgtaaaacctaatactaactgttttaagtcaattttgggtaatgcagGAATACAACCTGTATCAACTTGTGAAAAACAGGGAAAAGCTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACA

Basic information

species Glycine max
transcript GLYMA16G17580.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690052|gb|BG156388.1|BG156388
EST:     AGGAAGTTATACGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTACATG                         GAATACAACCTGTATCAACTTGTGAAAAACAGGGAAAAGCTGTTTTCTGAA
genomic: AGGAAGTTATACGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTACATGgtgagtgtct ... ggtaatgcagGAATACAACCTGTATCAACTTGTGAAAAACAGGGAAAAGCTGTTTTCTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcctatgtaaaacctaatactaactgttttaagtcaattttgggtaatgcagGAATACAACCTGTATCAACTTGTGAAAAACAGGGAAAAGCTGTTTTCTGAAAATGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACA
                    tactaac  putative branch site (score: 0)
 ttttaagtcaatttt  TA-rich tract