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gtattgtctactaatcaatatatgttttttgactgtttgtcttcatgaaccattccctaagaatgttgttggctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG
species | Glycine max |
transcript | GLYMA16G17190.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|192305159|gb|FG993939.1|FG993939
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|7924546|gb|AW830572.1|AW830572
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAACGTTAGGTATTGTGATGGGTCATCATEST: gi|6567013|gb|AW234640.1|AW234640
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|21675217|gb|BQ627568.1|BQ627568
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|27425520|gb|CA937040.1|CA937040
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|37995287|gb|CF806876.1|CF806876
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|4314114|gb|AI461233.1|AI461233
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|298194576|gb|HO043048.1|HO043048
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|213594458|gb|DB970024.1|DB970024
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|19935349|gb|BQ080379.1|BQ080379
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATEST: gi|17519199|gb|BM188241.1|BM188241
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
EST: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAG ATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
genomic: ATCACTTTCCTTTTCTGGGTTTTTCAGTAACAGTAAAAAGTTCAATCCAGgtattgtcta ... gctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCAT
ttttgactgtttgtcttcatgaaccattccctaagaatgttgttggctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG
ttttgac putative branch site (score: 3)
ctattcc putative PPT
taagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtctactaatcaatatatgttttttgactgtttgtcttcatgaaccattccctaagaatgttgttggctattccagATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT