1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcccttttttgtaaattcttgatattttccagacacaatatatgaaatattggaaaagttctctatttttgttaatgatcttcaatacaatttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACTCGATTAGGTTCATCTAAGAAAATGGATACATCACTTTCCTTTTCTGGGT
species | Glycine max |
transcript | GLYMA16G17190.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACTEST: gi|120530175|gb|EH258309.1|EH258309
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACTEST: gi|192295017|gb|FG986736.1|FG986736
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
aatattggaaaagttctctatttttgttaatgatcttcaatacaatttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACTCGATTAGGTTCATCTAAGAAAATGGATACATCACTTTCCTTTTCTGGGT
tgttaat putative branch site (score: 3)
tttgtttt putative PPT
tatttttgttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccttttttgtaaattcttgatattttccagacacaatatatgaaatattggaaaagttctctatttttgttaatgatcttcaatacaatttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACTCGATTAGGTTCATCTAAGAAAATGGATACATCACTTTCCTTTTCTGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA