1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtcaagaaatatagcaatccttatgctaggtagatttctttctttttttgtattgtaattttcattgcagtgtttcaaaatctgtttttatgttttagTCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAATCGAGTTCCAGAGAAGAAATGCTGAAAGCTCTCAATTTGAATTCTGAAC
species | Glycine max |
transcript | GLYMA16G17090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCTTGAAATGCCCGTGCCAACATTAATTAAGGATGCACTTCTGAAG TCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAAEST: gi|193632155|gb|FK582789.1|FK582789
genomic: TGTTGCTTGAAATGCCCGTGCCAACATTAATTAAGGATGCACTTCTGAAGgtaatcaatt ... tatgttttagTCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAA
EST: TGTTGCTTGAAATGCCCGTGCCAACATTAATTAAGGATGCACTTCTGAAG TCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAA
genomic: TGTTGCTTGAAATGCCCGTGCCAACATTAATTAAGGATGCACTTCTGAAGgtaatcaatt ... tatgttttagTCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAA
ttttttgtattgtaattttcattgcagtgtttcaaaatctgtttttatgttttagTCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAATCGAGTTCCAGAGAAGAAATGCTGAAAGCTCTCAATTTGAATTCTGAAC
tctgttttt CT-rich tract
aaaatctgtttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcaagaaatatagcaatccttatgctaggtagatttctttctttttttgtattgtaattttcattgcagtgtttcaaaatctgtttttatgttttagTCTGGAAAGGCAAGCCTTGGAGAGGAGTTGCACAAGGTTTTGATAGCTGAATCGAGTTCCAGAGAAGAAATGCTGAAAGCTCTCAATTTGAATTCTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-tgtcaag
- - - - - - - - - - -cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatc