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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattttaacaattcagtttgaggagtaacactagagctgtccttcattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG

Basic information

species Glycine max
transcript GLYMA16G12080.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G12080.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 4
--aaattttaacaattcagtttgaggagtaacactagagctgtccttcattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG
  | ||  | | |  ||  ||| |    | |||   ||  |  ||||  ||   | ||  | | |      |||      |  |||    ||||  |  ||||||||||||| | || || ||||| |||||||||||   |||||| || ||||| ||||||||| ||||||||| |||||| | ||||||||||||| | 
taagatccttaaatatccttttaat--atgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411962|gb|EV281773.1|EV281773
EST:     TCGTATTGCGCCTCATTTACTACCCATTCTG-ATTTCTTTGGAGTACAAG                         CTATGAAGTTCTGCTCACTTTGGATAAG
genomic: TCATATTGCGCCTCATTTACTACCCATTCTGGATT-CTTTGGAGTACAAGgtttatatta ... tttttaccagCTATGAAGTTCTGCTCACTTTGGATAAG
EST: gi|151408094|gb|EV277902.1|EV277902
EST:     ATCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAG                         CTATGAAGTTCTGCTCACTTTGGA
genomic: ATCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatta ... tttttaccagCTATGAAGTTCTGCTCACTTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG
             tttcctctgttcaatt  CT-rich tract
                         aattgttttacttt  TA-rich tract