Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtattgtataatctagttttattacaaattactggtttatgattgatgggaaatctttcaagatagaatattccatgatcacttcctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTAT

Basic information

species Glycine max
transcript GLYMA16G10750.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G115757_T02 (Zea mays), 3'ss of exon 4
tgtgtattgtataatctagttttattacaaattactggtttatgattgatgggaaatctttcaagatagaatattccatgatcacttcctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTAT
                |  ||   |  ||  |      ||| || | | || |  || ||||    |   | ||||| | |||         || |  ||| ||||| |||||  |  ||||||||||  ||||||| ||||| ||| |||| || |||||||| |||||||||||    || || || ||||| |||||
---------------gtgattaattggcatgtctactctttgtgttggttgtgttatgtttctctgtctga-attcctttatc-------tactctatagGATGGGATCAGGGTCTCCTGGGAATGTGCGTTGGTGAAAAGCGGAAGTTGAAGATCCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTAT

upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 4
-tgtgtattgtataatctagttttattacaaattactggtttatgattgatgggaaatctttcaagatagaatattccatgatcacttcctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTAT
       |  ||||    | |     | | | ||  ||||| |            |     |  ||  |    ||  | | |  | |  ||   |||||||| |||||||| ||||| ||||| |||||| | ||||||||||| ||||||||||||||  |||||||||| ||||| |  ||||| || || || |  ||
actccactcatatatgacaatgaagcttcca-ttgttggttgaaccagagcattgagatggtggagtcattggatgtcctaacaaatgtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312663|gb|BG406314.1|BG406314
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298193329|gb|HO033763.1|HO033763
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208276591|gb|GE079099.1|GE079099
EST:     GAGCTTGGTACTGGTTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: GAGCTTGGTACTGG-TCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|27423853|gb|CA935373.1|CA935373
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298175734|gb|HO018331.1|HO018331
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|24135582|gb|BU926092.1|BU926092
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|27427266|gb|CA938786.1|CA938786
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192324946|gb|FK016117.1|FK016117
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192297771|gb|FG989977.1|FG989977
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|193527054|gb|FK484566.1|FK484566
EST:     CCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGTGTAAGCTGA
genomic: CCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|26267833|gb|CA818896.1|CA818896
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298198249|gb|HO039788.1|HO039788
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298170036|gb|HO018660.1|HO018660
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192315333|gb|FK009625.1|FK009625
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|14011654|gb|BG726576.1|BG726576
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208316505|gb|GE113615.1|GE113615
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|151407606|gb|EV277421.1|EV277421
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298187400|gb|HO034549.1|HO034549
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208192023|gb|GD990599.1|GD990599
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192327623|gb|FK020656.1|FK020656
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|209726138|gb|BW675313.1|BW675313
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGT-AGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|4283975|gb|AI440723.1|AI440723
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGAATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTG
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGA-TTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTG
EST: gi|6747607|gb|AW318120.1|AW318120
EST:     AAGAGATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|207697931|gb|GD680100.1|GD680100
EST:     TGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: TGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|6847379|gb|AW349669.1|AW349669
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|22526013|gb|BU084824.1|BU084824
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|193426720|gb|FK391315.1|FK391315
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|31461364|gb|CD403392.1|CD403392
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|7146975|gb|AW508897.1|AW508897
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|12774035|gb|BG238962.1|BG238962
EST:     AAGAGATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|207776702|gb|GD748764.1|GD748764
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTG
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTG
EST: gi|193523670|gb|FK480967.1|FK480967
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTT
EST: gi|209700346|gb|BW664383.1|BW664383
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|38192531|gb|CF921737.1|CF921737
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298162996|gb|HO011729.1|HO011729
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|193404074|gb|FK366520.1|FK366520
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|214005513|gb|DB989203.1|DB989203
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192304037|gb|FG993881.1|FG993881
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|209700345|gb|BW664382.1|BW664382
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|209726139|gb|BW675314.1|BW675314
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGT-AGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|10845833|gb|BF068875.1|BF068875
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|27423836|gb|CA935356.1|CA935356
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|15203525|gb|BI426293.1|BI426293
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|207690133|gb|GD671518.1|GD671518
EST:     TGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: TGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|7589192|gb|AW704971.1|AW704971
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|11413630|gb|BF425641.1|BF425641
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208060845|gb|GD858755.1|GD858755
EST:     GGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: GGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|193364499|gb|FK333540.1|FK333540
EST:     AGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAAG                         GTTGGGACCAGGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCT
genomic: AGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATC-AAAGgtatgttgtg ... ctctttgcagGTTGGGACCA-GGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCT
EST: gi|14990944|gb|BI316617.1|BI316617
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|17402092|gb|BM178874.1|BM178874
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208087768|gb|GD887690.1|GD887690
EST:     TACTGGTCAAGTGTATTCTAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTG
genomic: TACTGGTCAAGTG-A-TC-AAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTG
EST: gi|9899664|gb|BE608632.1|BE608632
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|31475040|gb|CD417068.1|CD417068
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|151402182|gb|EV271995.1|EV271995
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298185920|gb|HO031081.1|HO031081
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192325979|gb|FK016656.1|FK016656
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|213601554|gb|DB972346.1|DB972346
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGCACCATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|298166273|gb|HO009244.1|HO009244
EST:     AGGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|9902932|gb|BE611900.1|BE611900
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|20498677|gb|BQ273607.1|BQ273607
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|38193858|gb|CF923064.1|CF923064
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|5509520|gb|AI856078.1|AI856078
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|254347228|gb|GR856898.1|GR856898
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|7692067|gb|AW760182.1|AW760182
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|9901330|gb|BE610298.1|BE610298
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|14195946|gb|BE657760.2|BE657760
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|13481192|gb|BG510535.1|BG510535
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|208246223|gb|GE048385.1|GE048385
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192295117|gb|FG986836.1|FG986836
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGAAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|192328912|gb|FK019667.1|FK019667
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTCGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|42722852|gb|CK768751.1|CK768751
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
EST: gi|13181466|gb|BG352806.1|BG352806
EST:     AAGAAATAATCCAATTGAATNTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgggaaatctttcaagatagaatattccatgatcacttcctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTAT
 gattgat  putative branch site (score: 4)
                                    tcacttcctctctttg  putative PPT
                    atagaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgtattgtataatctagttttattacaaattactggtttatgattgatgggaaatctttcaagatagaatattccatgatcacttcctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - -actggtt
- - - - - - - - - - - - - - - - - - - - - - - tgatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccatga