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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaccacttgagcactttttccccccaaaatagaaaactagctgctctgcctcctcataatctcataatggagtaaattttaattgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGATGGCCTTCAATACCAATTACAAGGATACAGGTCTTTTTGGTGTTTATGCT

Basic information

species Glycine max
transcript GLYMA16G10360.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022276|gb|CX709017.1|CX709017
EST:     GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGG                         TTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT
genomic: GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGGgtacaccact ... ttgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT
EST: gi|58022560|gb|CX709301.1|CX709301
EST:     GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGG                         TTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT
genomic: GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGGgtacaccact ... ttgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT
EST: gi|9820205|gb|BE555715.1|BE555715
EST:     ATTGTTGG-TTCTTGGAATAAAACCCCGAG-AGGTGGAAAACAACATGG-                         TTCTGAGTTGGCACCACGAGTTTGCATTTATGAA
genomic: AT-GTTGGGTTCTTGGAATAAAACCGC-AGGAGGTGGAAAACA-CATGGGgtacaccact ... ttgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAA
EST: gi|6667589|gb|AW279040.1|AW279040
EST:     GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGG                         TTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT
genomic: GCTATGTTGGGTTCTTGGAATAAAACCGCAGGAGGTGGAAAACACATGGGgtacaccact ... ttgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgctctgcctcctcataatctcataatggagtaaattttaattgtgaacagTTCTGAGTTGGCACAACGAGTTGGCATTAATGAAGTTGCAGAAAGCATGATGGCCTTCAATACCAATTACAAGGATACAGGTCTTTTTGGTGTTTATGCT
                                       ttttaat  putative branch site (score: 3)
 ataatggagtaaattt  TA-rich tract