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...ccttgattgttcatttggaattaaattctgtattatagaggaaaagggattcacatttttgtttttcttttgtttctgtctgttttgtttgggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGATGCTAATTTTTTTGATCAGCCAGAAATGCTTGGAGAGCCCATTGCAACT
species | Glycine max |
transcript | GLYMA16G08470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAAG-AGGGAAAGCAGCTGCAAAGATAATAGCCCTTGCACTGGATTTGGEST: gi|298166108|gb|HO009079.1|HO009079
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAA-GTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGG
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGAEST: gi|298179589|gb|HO026970.1|HO026970
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTEST: gi|19345789|gb|BM890669.1|BM890669
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACT
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGAEST: gi|151412168|gb|EV281980.1|EV281980
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGAEST: gi|254340856|gb|GR854584.1|GR854584
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGAEST: gi|151410428|gb|EV280243.1|EV280243
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
gggattcacatttttgtttttcttttgtttctgtctgttttgtttgggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGATGCTAATTTTTTTGATCAGCCAGAAATGCTTGGAGAGCCCATTGCAACT
atttttgtttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgattgttcatttggaattaaattctgtattatagaggaaaagggattcacatttttgtttttcttttgtttctgtctgttttgtttgggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGATGCTAATTTTTTTGATCAGCCAGAAATGCTTGGAGAGCCCATTGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA