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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttatagtaataatattaaatatccatgcaagcaattgttttgaagtttatctaaggtgtttggtatttttggacctttcccttctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTTTACTGCACCTATATTCTCTGCCTTTGCTTCATGGGCAACTTATCTTCTG

Basic information

species Glycine max
transcript GLYMA16G08410.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttat-agtaataatattaaatatccatgcaagcaattgttttgaagtttatctaaggtgtttggtatttttggacctttcccttctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTTTACTGCACCTATATTCTCTGCCTTTGCTTCATGGGCAACTTATCTTCTG
                                        |||| | |  | |   | |||| || |||  ||||  |||  || | | |     |||||||  ||||  ||      ||  ||| | ||  ||               ||||  | | |||||  | ||||| ||||| ||||| || ||||| ||||| || ||||||||| |||| || || ||||| || ||||||||||| ||| ||
----------------------------------------gtgagtgtagtttcactgttatcagcaat--tatttgatacacacgtatgggtcagttttgagttttaatta------tttatatctatgtgcca--------------cagGGGATTAAATTCATTAAACATTCCTCTGTCAGTAGAGACTGTCTGTGTCTTCACTGCACCTGTATTTTCAGCTTTTGCATCCTGGGCAACTTACCTTTTG

upper sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------gtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattt---tatagt-------aataatattaaatatcca---------tgcaagcaattgttttgaagtttatctaaggtgtttggtatttttggacctttcccttctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTTTACTGCACCTATATTCTCTGCCTTTGCTTCATGGGCAACTTATCTTCTG
                        | |    ||| |  | | |||||    | ||  | |  | |  |||| ||  |   ||   || |||       ||| |  ||  ||||  |         || ||  | |   | ||||      ||  ||    |  |  || ||| ||  | | ||||| |  |||| || |||||||| | || || ||||| || ||||||||||| ||||||||||||||||||||||| |||||   |||| ||||||||||||||||||||
gtgggtatttgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgcttctagattgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcagGTTATTGAATTCCTTGAATATTCCTCTATCTGTTGAAACTGTCTGTGTGTTTACTGCACCTATATTTTCTGCTAATGCTGCATGGGCAACTTATCTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213612204|gb|DB956885.1|DB956885
EST:     GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCG                         GATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcattt ... ctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
EST: gi|213619661|gb|DB965607.1|DB965607
EST:     GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCG                         GATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcattt ... ctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
EST: gi|213588333|gb|DB967819.1|DB967819
EST:     GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCG                         GATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcattt ... ctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
EST: gi|209707445|gb|BW664904.1|BW664904
EST:     GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCG                         GATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT
genomic: GGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcattt ... ctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagtttatctaaggtgtttggtatttttggacctttcccttctggtttcagGATACTGAATTCCATTAACATACCTCTCTCAGTTGAAACTGTTTGTGTGTTTACTGCACCTATATTCTCTGCCTTTGCTTCATGGGCAACTTATCTTCTG
                                   cctttcccttctggtt  CT-rich tract
       tttatctaa  TA-rich tract