1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtagatgaacaactgaattcatttatgttatcaaaattttcaaattctccacattgcattattttagtaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAGCAAATTGGTGAA
species | Glycine max |
transcript | GLYMA16G08200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|9564950|gb|BE474459.1|BE474459
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|193511651|gb|FK470446.1|FK470446
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|15000694|gb|BI321508.1|BI321508
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|208277990|gb|GE074913.1|GE074913
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATEST: gi|7686453|gb|AW757101.1|AW757101
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTTGAATCAAGGAA GCANGAGGGTTTATTCTTAGATGATGAGATTGCCTTCAATGATGCTGTTATEST: gi|209725412|gb|BW651556.1|BW651556
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCCATGAGGCTATTATEST: gi|208146298|gb|GD948403.1|GD948403
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|193476691|gb|FK439538.1|FK439538
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATEST: gi|21888894|gb|BQ742107.1|BQ742107
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|151398998|gb|EV268869.1|EV268869
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|192299164|gb|FG992895.1|FG992895
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|7232940|gb|AW568291.1|AW568291
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: CAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|209702008|gb|BW683185.1|BW683185
genomic: CAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATEST: gi|192296912|gb|FG990258.1|FG990258
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|9819749|gb|BE555262.1|BE555262
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|192315290|gb|FK009610.1|FK009610
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGGGGCTATTATEST: gi|10254732|gb|BE822498.1|BE822498
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGNTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|21255947|gb|BQ452835.1|BQ452835
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATEST: gi|9565390|gb|BE474899.1|BE474899
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
attctccacattgcattattttagtaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAGCAAATTGGTGAA
attgcattatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagatgaacaactgaattcatttatgttatcaaaattttcaaattctccacattgcattattttagtaccttagctattgcattattcatgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAACAGCAAATTGGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacctt