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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagtctatgttgtgtattattagaaaatatcaggttgccttagtcttttggatgtgattaattcctttctaactttttgtttacattgttacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|254327243|gb|GR836852.1|GR836852
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|298197220|gb|HO041963.1|HO041963
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTAC
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTAC
EST: gi|254327242|gb|GR836851.1|GR836851
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     TTTATTGCTTTGCCGAATAATTCCAGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|7327013|gb|AW620811.1|AW620811
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTCTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAA                         CACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
genomic: TTTATTGCTTTGCCGAATAATTCCTGGCTTTGGCTTCTCTCCGTCTTCAAgtatgttgtt ... tacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttggatgtgattaattcctttctaactttttgtttacattgttacgctgcagCACAATTCAAGTAGTTATGACTACTATAAAGTACATTCCTCAG
                      ttctaac  putative branch site (score: 1)
                         taactttttgttta  TA-rich tract