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gttagcactgggtttcttgcaccattttgtcaatattctgtattggtctcactacattatagtcttttggttgatttaaaatgaccattctctgtctccctttttcttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAACAGTGTTGAGGGTT
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTANAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|192310375|gb|FK002255.1|FK002255
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|16348194|gb|BI973789.1|BI973789
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|213607767|gb|DB959106.1|DB959106
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|254331186|gb|GR843305.1|GR843305
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|213608230|gb|DB970827.1|DB970827
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|19453077|gb|BM954487.1|BM954487
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|19268946|gb|BM885202.1|BM885202
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|9986040|gb|BE660148.1|BE660148
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|37995559|gb|CF807148.1|CF807148
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGEST: gi|15663680|gb|BI701051.1|BI701051
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
EST: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG ATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
genomic: AAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTGgttagcactg ... ttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTG
gtcttttggttgatttaaaatgaccattctctgtctccctttttcttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAACAGTGTTGAGGGTT
ggttgat putative branch site (score: 5)
tgaccattctctgtct putative PPT
ttgatttaaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcactgggtttcttgcaccattttgtcaatattctgtattggtctcactacattatagtcttttggttgatttaaaatgaccattctctgtctccctttttcttccttttagATCAAATATGTAAGCGGCTCTTATGATTCTGAGGATGGCTTCCGCCTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAACAGTGTTGAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA