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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatctgtaaatcaatgaataaaacaatatttttgttccttctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT

Basic information

species Glycine max
transcript GLYMA16G06100.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06100.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g41930.1 (Oryza sativa), 3'ss of exon 4
gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatctgtaaatcaatgaataaaacaatatttttgttccttctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
              |||  ||  |  ||| | | |   || | | |  |||  | |   |  ||| |       ||||| |  |   |||  |  ||  ||||| || |||||  | || |||||||||||| | |||||||| ||| ||||||| |||||  |||| ||||| ||||| |||||||||||||||||||| |
------------gtaatggttacagctggcgtgtgtttatttctca-tttacttttggtttcatgcac----tgatattctgctatattcatt--ctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCT

upper sequence: GLYMA16G06100.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G033117_T01 (Zea mays), 3'ss of exon 4
gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatctgtaaatcaatga---ataaaacaatatttttgttccttctcttccttgt-agGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
                      | | ||||   | | ||| | | |     |   |   ||| |      | |  |  |  | |      | ||   || ||| |||| || ||| |  | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| |
----------------------gtactggta--acatcatttgtcattacgttcattcctcatttccttttgattccttgctctgacgtttccttcaccatgttagGTGAGGATCTGCATTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCT

upper sequence: GLYMA16G06100.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G011923_T01 (Zea mays), 3'ss of exon 4
gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatctgtaaatcaatgaataaaacaatatttttgttccttctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
                           |    || | ||| | | |   | |   |   |||     |         |  |    |    || || |   |||| || ||||| || |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||| || ||||| |
---------------------------gtactgataacatctgtcattatgtgcatttctcatctcctttggtttcttgctctgacaccttcatcatgtcagGTGAGGATCCGCGTTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCACTATGATGGCCCAAAGTTTCGCCTCGAGCTCT

upper sequence: GLYMA16G06100.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 3'ss of exon 4
gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatctgtaaatcaatgaataaaacaatatttttgttccttctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
           || |||||  |  |      | |   | |  || | | |       | ||  | | | |  || || | ||     |   |       |||||||| |||||||| ||||| || |||||||||||||| |||||| |||| ||||| ||  ||||||| |||||||| || ||||| || |||||||| |
----------gtaaaatatcattgatgaactgaaacacttaaattatcattctcaagactcccttactgagtca-tagtatttcatttctcccaataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTT

upper sequence: GLYMA16G06100.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S168_104V6.2 (Physcomitrella patens), 3'ss of exon 4
-------------gtagtagaatatagaatattttgaaatggtgggagaccatgtatgagcttatct-----gtaaatcaatgaataaaacaatatttttgttccttctcttcctt-----gtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
             | | |   || |  |||| |    | |   ||    |||  ||  |  |||  |     ||| | || |   |||  || |  || |   |    | ||  ||     ||||||  | |  ||| |  | ||||  || ||| | || ||||| || || |||||||||||  ||||||| ||||||||||| ||||| |||||| |||| |
gttgaatctcaaagcattgcgatgttaaatagt---gattcacggtttgccagatacaaatttaaatagtaggtagaacatttgttaagtcactgcttatccactcaatttttatttgaccgtagGTGCGGACTCGTATTCGAAAGCAGTGTAAGCCTTTAGAAGAGGACTCATTCAGGCCAGTGCTGCATCACTATGATGGGCCCAAGTTCCGTCTTCAGCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206077|gb|BU965330.1|BU965330
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|31459048|gb|CD401076.1|CD401076
EST:     GAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: GAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|208156515|gb|GD956825.1|GD956825
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATT
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATT
EST: gi|298190302|gb|HO032423.1|HO032423
EST:     CTGCCTGGGAGGATAAAAAATGCGAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGGAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|14011483|gb|BG726405.1|BG726405
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|6501903|gb|AW203276.1|AW203276
EST:     AAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254341084|gb|GR854812.1|GR854812
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|4282613|gb|AI440553.1|AI440553
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGCGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254320127|gb|GR831043.1|GR831043
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192307583|gb|FG999622.1|FG999622
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTTTGCAAGGCATTGGAAGAAGATTTTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|13563366|gb|BG551595.1|BG551595
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15000111|gb|BI320925.1|BI320925
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|208137092|gb|GD934536.1|GD934536
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGACAAAGGACAATTGGAAGAAGATT
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTG-CAA-GG-CA-TTGGAAGAAGATT
EST: gi|192320601|gb|FK012011.1|FK012011
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTTTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|31307475|gb|CD392678.1|CD392678
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254336107|gb|GR841432.1|GR841432
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192310236|gb|FK001934.1|FK001934
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254336108|gb|GR841433.1|GR841433
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|22522815|gb|BU081626.1|BU081626
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|22522894|gb|BU081705.1|BU081705
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|9820747|gb|BE556257.1|BE556257
EST:     AGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7232661|gb|AW568015.1|AW568015
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|4396720|gb|AI495717.1|AI495717
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7232641|gb|AW567995.1|AW567995
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAC                         GTAAGAATCCGTGTCAAGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGCGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatctgtaaatcaatgaataaaacaatatttttgttccttctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGATGGGCCAAAGTTTCGTCTTGAGCTGT
                            tatttttgttccttct  CT-rich tract
        taaatcaatgaataaa  TA-rich tract