1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatatatatatattgcaatttgtactgtttgacataataacgttttcacaatcagagaacatctttaactgagtcaaagtgcatattttgtcttcctagTTAAACATAAAAGATGCATTCAAACTCAGCCGATATGACTGGATGTGTAATGCACTTGAGGCATTTTTGAGAGTAATGGCAGAAGACAGAAAGCCTGAGA
species | Glycine max |
transcript | GLYMA16G05080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGAACTTGAGACATGGCCAGAGCAGAAAAACCACGCTCGCCAATGG TTAAACATAAAAGATGCATTCAAACTCAGCCGATATGEST: gi|151404403|gb|EV274213.1|EV274213
genomic: CTGAAGAACTTGAGACATGGCCAGAGCAGAAAAACCACGCTCGCCAATGGgtaggtgcta ... gtcttcctagTTAAACATAAAAGATGCATTCAAACTCAGCCGATATG
EST: CTGAAGAACTTGAGACATGGCCAGAGCAGAAAAACCACGCTCGCCAATGG TTAAACATAAAAGATGCATTCAAACTCAGCCGATATGACTGGATGTGTAAT
genomic: CTGAAGAACTTGAGACATGGCCAGAGCAGAAAAACCACGCTCGCCAATGGgtaggtgcta ... gtcttcctagTTAAACATAAAAGATGCATTCAAACTCAGCCGATATGACTGGATGTGTAAT
ttcacaatcagagaacatctttaactgagtcaaagtgcatattttgtcttcctagTTAAACATAAAAGATGCATTCAAACTCAGCCGATATGACTGGATGTGTAATGCACTTGAGGCATTTTTGAGAGTAATGGCAGAAGACAGAAAGCCTGAGA
ctttaac putative branch site (score: 3)
tattttgtcttcct putative PPT
atattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatatatatattgcaatttgtactgtttgacataataacgttttcacaatcagagaacatctttaactgagtcaaagtgcatattttgtcttcctagTTAAACATAAAAGATGCATTCAAACTCAGCCGATATGACTGGATGTGTAATGCACTTGAGGCATTTTTGAGAGTAATGGCAGAAGACAGAAAGCCTGAGA
- - - - - -tattgca
- - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat