Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattatttcaaggttctatagttccattattcgttctgtaaaaggtttgattttttatgtttgttattaaacatttagcactttaactctatattcattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGATGCCAATGATTTAGATGTTCAATCTGAAGTGAATAATATTGTTGGATTGC

Basic information

species Glycine max
transcript GLYMA16G03840.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753628|gb|AI960915.1|AI960915
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|7146563|gb|AW508485.1|AW508485
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|6916457|gb|AW397987.1|AW397987
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|208319902|gb|GE116317.1|GE116317
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|5753645|gb|AI960932.1|AI960932
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|213616958|gb|DB959270.1|DB959270
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTAAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttatgtttgttattaaacatttagcactttaactctatattcattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGATGCCAATGATTTAGATGTTCAATCTGAAGTGAATAATATTGTTGGATTGC
                              ctttaac  putative branch site (score: 3)
                                           ttcattct  putative PPT
     tatgtttgttattaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattatttcaaggttctatagttccattattcgttctgtaaaaggtttgattttttatgtttgttattaaacatttagcactttaactctatattcattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGATGCCAATGATTTAGATGTTCAATCTGAAGTGAATAATATTGTTGGATTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG