1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagaacaactattctcgttttatttataataatgttttgatagttatgaatatgaactatgcaatttactgatttccataatcttcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAAGATAGACCCTCTGGCAGAGAAGGCACTCATCGAGTTCAAGAAGCAGTA
species | Glycine max |
transcript | GLYMA16G03410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|6747018|gb|AW317474.1|AW317474
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCTATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|9439799|gb|BE440313.1|BE440313
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATTEST: gi|11413441|gb|BF425452.1|BF425452
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|151399497|gb|EV269368.1|EV269368
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTT-GTTGCATACGGT-CCTGTCATCTATGACAAGTAEST: gi|12773507|gb|BG238434.1|BG238434
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGEST: gi|151410252|gb|EV280067.1|EV280067
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATG
EST: TATATCAATTGTGGGGAGCTGGTGTAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|19345746|gb|BM890626.1|BM890626
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|22522564|gb|BU081375.1|BU081375
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|22524798|gb|BU083609.1|BU083609
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|6914768|gb|AW396298.1|AW396298
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: ATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|10252850|gb|BE820616.1|BE820616
genomic: ATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: ATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|26047825|gb|CA784486.1|CA784486
genomic: ATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|14991649|gb|BI317322.1|BI317322
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|192294452|gb|FG987381.1|FG987381
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|192321786|gb|FK013192.1|FK013192
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|57575556|gb|CX548531.1|CX548531
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|151393790|gb|EV263665.1|EV263665
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: ATATCAATTGTGGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|192300856|gb|FG991178.1|FG991178
genomic: ATATCAATTGTGGGG-AGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAEST: gi|57575716|gb|CX548691.1|CX548691
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
EST: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTG TCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
genomic: TATATCAATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATTGgtaagaacaa ... tcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATA
atagttatgaatatgaactatgcaatttactgatttccataatcttcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAAGATAGACCCTCTGGCAGAGAAGGCACTCATCGAGTTCAAGAAGCAGTA
tactgat putative branch site (score: 2)
tcttcattt putative PPT
tatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacaactattctcgttttatttataataatgttttgatagttatgaatatgaactatgcaatttactgatttccataatcttcatttgcagTCTTTGTTTTGTTGCATACGGTTCCTGTCATCTATGACAAGTATGAGGATAAGATAGACCCTCTGGCAGAGAAGGCACTCATCGAGTTCAAGAAGCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC